QoS (Quality of Service)#
We have implemented Quality of Service (QoS) starting 6th of June 2018.
The QoS can be added to each job that is submitted to Slurm. The quality of service associated with a job will affect the job in three ways:
Job Scheduling Priority
Job Preemption
Job Limits
How to run jobs with QoS#
A table to show the differences between QoS:
Queue |
Description |
Max Walltime |
Max GPU per user |
Max CPU per user |
Priority |
Preemption |
|---|---|---|---|---|---|---|
normal |
Default QoS for every job |
7 days |
4 |
200 |
50 |
No |
rtq |
QoS for interactive job |
48 hours |
6 |
72 |
200 |
No |
irq |
QoS for interruptable job |
7 days |
No limit |
No limit |
200 |
Yes |
shortq |
QoS for job with short walltime |
30 mins |
10 |
280 |
250 |
No |
Explanation#
These QoS are applied to the partition comp.
--qos=normal
This is the QoS for all the jobs that do not specify a QoS. Jobs that run here won’t be interrupted.
--qos=rtq
This is intended to be used by jobs that have an instrument or a real-time
scenario and therefore can’t be interrupted and must be available on demand.
You can only use a few CPUs and GPUs, but jobs will start as soon as possible
(before normal jobs).
--qos=irq
This is intended to be used by jobs that are interruptible. To use the irq
you have to be prepared to either restart from scratch (if the job was short anyway)
or restart from a checkpoint. Jobs will start very quickly and use all the
available resources but may be stopped at short notice to allow shortq or
rtq jobs to run.
The mechanism to checkpoint depends on the software that you are running.
Please contact us if you have any questions with regards to job checkpointing.
--qos=shortq
This is intended to be used by short and uninterruptible jobs. These jobs will
run before normal but the walltime is limited.
An example of Slurm GPU job script#
#!/bin/bash
#SBATCH --job-name=MyJob
#SBATCH --account=<my_account>
#SBATCH --qos=<irq,shortq,rtq>
#SBATCH --gres=gpu:<K80,P100,V100>:1
#SBATCH --ntasks=2
<GPU processing program>
An example Slurm job script#
#!/bin/bash
#SBATCH --job-name=MyJob
#SBATCH --account=<my_account>
#SBATCH --qos=<irq,shortq,rtq>
#SBATCH --ntasks=2
openmpi/1.10.7-mlx
mpirun <program>
An example of Slurm job script for Genomics partition#
#!/bin/bash
#SBATCH --job-name=MyJob
#SBATCH --account=<my_account>
#SBATCH --qos=genomics
#SBATCH --partition=genomics
#SBATCH --ntasks=2
module load bwa