Installed software modules#
Jump to software beginning with A B C D E F G H I J K L M N O P Q R S T U V W X Y Z.
Attention
Some software packages on M3 have license conditions that restrict
access to the software to certain user groups. These software packages are
marked with the restricted keyword. To apply for access to restricted
software,
log in to the HPC ID system and
navigate to the Software section of your profile. To enquire about
restricted software contact the MASSIVE Help Desk
Note
Software packages with a version named ansto are copies of the software
installed on the ASCI facility
Software |
Version(s) |
|---|---|
3daprecon |
0.0.1, 1.0 |
3depict |
0.0.15 |
3dslicer |
4.10.2, 4.6.0, 4.8.1 |
A |
|
abaqus |
2016, 2019, 6.14 |
abinit |
8.8.3 |
abricate |
0.8.13 |
abyss |
2.0.2 |
adapterremoval |
2.3.1 |
adf |
2019.104 |
adxv |
1.9.12 |
afni |
16.2.16, 17.0.11 |
agent |
2.0.5 |
alfred |
20210729 |
align2rawsignal |
2.0 |
allpathslg |
52488 |
alphafold |
0bab1bf |
amber |
18-multi-gpus, 18-parallel, 18-parallel-pmemd.gem, 18-serial, 18-single-gpu |
amide |
1.0.5 |
amira |
2020.2, 6.3.0, 6.4.0, 6.5.0 |
anaconda |
2018.12-Python3.7-gcc6, 2019.03-Python3.7-gcc5, 2020.07-Python3.8-gcc8, 4.3.1-Python3.5, 4.3.1-Python3.5-gcc5, 5.0.1-Python2.7-gcc5, 5.0.1-Python3.5-gcc5, 5.0.1-Python3.6-gcc5, 5.1.0-Python3.6-gcc5(default) |
analyze |
12.0 |
analyze-temp |
12.0 |
ancestry_hmm |
efca8ee |
angsd |
0.931, 0.931-realsfs |
ansys |
18.1, 19.1, 19.2, 20r2 |
ants |
1.9.v4, 20190910, 2.2.0, 2.3.1, 2.3.4 |
any2fasta |
0.4.2 |
aocc |
2.3.0 |
apbs |
3.0.0 |
apex |
latest |
apr |
1.6.5 |
apr-util |
1.6.1 |
aretomo |
1.0.1 |
argos |
3.0.0-beta52 |
aria2c |
1.35.0 |
ariba |
2.12.1, 2.14.4 |
armadillo |
9.200-rc1 |
arpack |
2.1, 3.1.3-2 |
arrayfire |
3.7.1 |
ascp |
3.5.4 |
ashs |
1.0.0 |
aslprep |
0.2.7 |
astra-toolbox |
1.9.9.dev4 |
atlas |
3.10.2-gcc4, 3.10.2-gcc5 |
atom |
1.39.1 |
atomprobedevcode |
1.0.0(default) |
attr |
2.4.46-12 |
augustus |
3.3.3 |
autodock_vina |
1.1.2 |
automake |
1.16.1, 1.4-p6 |
autometa |
2019-09 |
avizo |
2020.2, 9.0.1, 9.3.0, 9.3.0.1, 9.4.0, 9.5.0, 9.7 |
axel |
2.12 |
B |
|
bamsurgeon |
1.2 |
bamtofastq |
1.2.0 |
bamtools |
2.4.1 |
barrnap |
0.9 |
bart |
0.4.04, 0.4.04-cuda9.0 |
bayenv |
2.0 |
bayesass |
1.3, 3.04, 3.0.4-snps |
bayescan |
2.1 |
baypass |
2.2 |
bbcp |
17.12 |
bbmap |
38.81 |
bcbtoolkit |
4.0.0 |
bcftools |
1.11, 1.6, 1.7, 1.8 |
bcl2fastq |
2.19.1 |
beagle |
2.1.2, 3.1.2 |
beast1 |
1.10.0, 1.8.4 |
beast2 |
2.4.7, 2.4.8, 2.5.0, 2.6.3 |
bedops |
2.4.39 |
bedtools |
2.26.0, 2.26.0-gcc5, 2.27.1-gcc5, 2.29.2, 2.30.0 |
bgen |
1.1.4 |
bids-validator |
1.3.1, 2019.01 |
bidscoin |
2.2, 3 |
bigdatascript |
v0.99999e |
bigwigtowig |
377-0 |
bilm-tf |
1.0 |
biobambam |
0.0.191 |
biobambam2 |
2.0.146 |
biobloom |
2.3.3 |
biogrinder |
0.5.4 |
biscuit |
0.2.2, 0.3.8.20180515 |
bismark |
v0.19.1 |
bison |
2.7.1 |
blas |
3.10.0-gcc8, 3.8.0-gcc5, 3.8.0-gcc5-pic |
blast |
2.2.30, 2.3.0, 2.7.1(default) |
blast+ |
2.9.0 |
blat |
37 |
blender |
2.81, 2.90.1(default), 2.92 |
bliss |
0.73 |
bolt-lmm |
2.3.2, 2.3.4 |
boost |
1.46.0-gcc5, 1.46.1-gcc5, 1.52.0-gcc5, 1.58.0, 1.58.0-gcc5, 1.62.0, 1.62.0-gcc4, 1.67.0-gcc5, 1.72.0-gcc8, 1.76.0 |
bowtie |
1.1.2 |
bowtie2 |
2.2.9, 2.3.5 |
bracken |
2.5 |
brain_age |
v1.0_18Jan2018 |
braker |
2.1.6 |
breseq |
0.29.0, 0.33.2 |
bsoft |
1.9.2, 2.0(default) |
busco |
3.0.2(default), 5.1.3 |
buster |
20170508 |
bwa |
0.7.12, 0.7.17-gcc5 |
bwa-meth |
0.2.2 |
bzip2 |
1.0.6 |
C |
|
cactus |
1.0.0 |
caffe |
1.0.0, 1.0.0-protbuf32, caffe-matlab, caffe-tsn, deepvistool, latest(default), rc4 |
caffe2 |
0.8.1 |
caffe_enet |
1.0 |
caffe_unet |
1.0, 18.04, 2.0 |
camino |
2020-09-21 |
canu |
1.7.1 |
caret |
5.65 |
caw |
0.2.4(default) |
cblas |
20032302-gcc5 |
ccp-em |
1.3.0, nightly-20210608 |
ccp4 |
7.0, 7.0.072, ccp4i, ccp4i2, ccp4mg, coot |
cdhit |
4.8.1 |
cdo |
1.9.8 |
cellprofiler |
2.2.0, 3.1.5, 3.1.9 |
cellprofileranalyst |
2.2.0 |
cellranger |
2.0.1, 3.0.2(default), 6.0.0, 6.1.1 |
centrifuge |
1.0.4-beta |
cfdem |
march2021 |
checkm |
1.1.3 |
checkv |
0.7.0 |
chimera |
1.10.2, 1.11, 1.13, 1.14 |
chimerax |
0.6, 0.8, 0.91, 0.93, 1.1(default) |
chrome |
68, 69, 75, 77, 78, 80, 80.0.3987.163, 88.0.4324, 89.0.4389.72, 90.0.4430.93, default |
chuffed |
0.10.3 |
circos |
0.69-6 |
cistem |
0763183(default), 0aabb63_20210505, 1.0.0-beta, 74d697f |
civet |
2.1.1(default) |
clairvoyante |
1.02 |
clamms |
1.1 |
clonalframeml |
1.11 |
cloudcompare |
2.11.2 |
cloudstor |
2.3.1-1.1, 2.4.1, 2.4.2 |
clustal-omega |
1.2.4 |
cmake |
2.8.12.2, 2.8.12.2-gcc5, 3.10.2-gcc4, 3.10.2-gcc4-system, 3.10.2-gcc5, 3.15.1-gcc4-system, 3.15.1-gcc5, 3.15.4-gcc8, 3.21.3-gcc8, 3.5.2, 3.5.2-gcc4, 3.5.2-gcc5 |
cmkl |
9.1.023 |
cnvkit |
0.9.5 |
cnvnator |
0.4.1 |
colmap |
3.6 |
comsol |
5.2a, 5.4, 5.4-ee |
conda-install |
latest |
connectome |
1.2.3(default) |
convert3d |
1.0.0 |
coot |
0.8.9.1 |
coventormp |
1.002 |
cp2k |
5.1.0, 6.1.0, 8.1.0 |
cplex |
12.10.0(default), 12.6, 12.6.3, 12.7.1, 12.8.0, 20.1 |
cpmd |
3.17.1, 4.3 |
crisprcasfinder |
1.05 |
crisprdetect |
2.2 |
crispresso |
1.0.13-gcc5 |
crossmap |
0.3.5, 0.3.6 |
cryo-em-processing-tool |
0.1 |
cryoef |
1.1.0 |
cryolo |
1.0.0, 1.1.3, 1.3.1, 1.4.0, 1.4.1, 1.5.3, 1.5.6, 1.6.0, 1.7.2(default), 1.7.6 |
cryosparc |
beta, cryosparc-cluster, v2 |
crystallography |
0.0.3(default) |
cst |
2017 |
ctffind |
4.0.17, 4.1.10, 4.1.13, 4.1.14, 4.1.3, 4.1.4, 4.1.8 |
ctftilt |
latest |
cuda |
10.0, 10.1(default), 11.0, 11.1, 11.4, 4.1, 4.1.bajk, 6.0, 7.0, 7.5, 8.0, 8.0.61, 8.0-DL, 9.0, 9.1 |
cudadeconv |
1.0 |
cudalibs8to9 |
0.1 |
cudnn |
5.1, 5.1-DL, 7.1.2-cuda8, 7.1.3-cuda9, 7.3.0-cuda9, 7.6.5.32-cuda10, 7.6.5-cuda10.1, 8.0.5-cuda10.1, 8.0.5-cuda11, 8.2.4 |
cufflinks |
2.2.1 |
cunit |
2.1.3 |
cutadapt |
0.16, 2.5, 2.7, 3.3 |
cytoscape |
3.4.0 |
D |
|
dada2 |
1.14 |
daris-utils |
1.0 |
darknet |
alexey, darknet_yolo_v3, latest |
dcm2niix |
1.0.20200331, 1.0.20201102, 1.0.20210317, latest |
dcmtk |
3.6.3 |
deep-complex-networks |
2017 |
deepemhancer |
2020-09-09 |
deepgraph |
0.2.3 |
deeplabcut |
latest |
deepmedic |
0.6.1, 0.7.0 |
deeptools |
3.1.2, 3.1.3 |
deepvariant |
0.8-cpu, 0.8-gpu |
dense3dcrf |
20160527 |
desmond |
2021.1 |
detectron |
20180322 |
detectron2 |
0.3(default) |
dftbplus |
18.2 |
dftd3 |
0.9 |
dials |
1.12.1, 1.5.1 |
diamond |
0.9.22 |
dicomnifti |
2.32.1 |
diyabc |
2.1.0 |
dke |
latest, latest-ft |
dlib |
19.20 |
dmtcp |
2.5.2 |
dominate |
2.3.5 |
dos2unix |
7.4.0 |
dragondisk |
1.0.5 |
drep |
3.0.0 |
drishti |
2.6.3, 2.6.4, ansto |
drmaa |
1.0.7, 1.1.0 |
dsistudio |
latest |
dsuite |
6695c6b |
dti-tk |
2.3.1 |
dtk |
0.6.4.1 |
duphold |
0.2.3(default) |
dwarfs |
0.5.5 |
dynamo |
1.1.178(default), 1.1.451 |
dynet |
2.1-cpu, 2.1-gpu |
E |
|
ea-utils |
1.1.2, 1.1.2-gcc5 |
eclipse |
4.7.3a, 4.8 |
effoff |
0.2.1(default) |
eigen |
2.0.17, 3.2.9, 3.3.0, 3.3.7 |
eigensoft |
7.2.1 |
eiger2cbf |
1.0 |
elastix |
5.0.0 |
elf |
1.0 |
eman |
2.12, 2.2, 2.22, 2.3, 2.3.1(default), 2.9, 2.91 |
emap-galaxy-shortcut |
1.0.0(default) |
emap-mytardis-shortcut |
1.0.0(default) |
emap-wiki-shortcut |
0.0.1(default) |
emapaccess |
1.0(default) |
emboss |
6.6.0 |
emclarity |
1.0.0(default), 1.4.3 |
emspring |
spring_v0-84-1470, spring_v0-84-1470_mlx |
epacts |
3.3.2 |
epu_group_afis |
0.3 |
exciting |
nitrogen |
exonerate |
2.4.0 |
expansionhunter |
4.0.2(default) |
expansionhunterdenovo |
0.9.1 |
exploredti |
4.8.6 |
F |
|
fasta36 |
36.3.8(default) |
fastani |
1.1, 1.33 |
fastml |
3.1, 3.11 |
fastp |
0.20.0 |
fastqc |
0.11.7, 0.11.9 |
fastQValidator |
0.1.1a |
fastspar |
0.0.7 |
faststructure |
1.0 |
fastsurfer |
c5894bd |
fasttree |
2.1.10 |
fastx-toolkit |
0.0.13 |
fcsalyzer |
0.9.12 |
fdtd |
2020a-r1, 2021-r2-2717, 8.21.1933 |
feedback |
1.0.1(default) |
ffmpeg |
3.4.2, 4.3.1 |
fftw |
3.3.4-gcc, 3.3.5-gcc, 3.3.5-gcc5 |
fgbio |
0.9.0 |
figtree |
1.4.3 |
fiji |
20160808, 20170223, 20170530, ansto, current, current.bak, fiji-super-res, MMI-MHTP, vis2021 |
filtlong |
0.2.0 |
fix |
1.064, 1.068 |
flash |
1.2.11-gcc5 |
flashpca |
2.0 |
flexbar |
3.4.0 |
flye |
2.3.5, 2.8 |
fmriprep |
1.0.15, 1.1.1, 1.2.5, 1.3.0_post2, 1.4.0, 1.4.1, 1.5.8, 20.2.1, 20.2.3 |
foma |
0.9.18 |
fooof |
0.1.3, 1.0.0 |
fouriertransform |
0.2.3(default) |
fox |
1.6.57 |
fpart |
1.2.0 |
freebayes |
0.9.9 |
freec |
11.5 |
freesurfer |
20160922, 5.3, 6.0, 6.0.0-brainvolstatsfixed, 6.0-patch, 7.1.0, devel-20171013, devel-20180612, devel-20190128 |
frustum |
xflx1992 |
fsl |
5.0.11, 5.0.9, 6.0.0, 6.0.1, 6.0.3, 6.0.4 |
fsleyes |
0.22.4, 0.23.0, 0.24.3, 0.32.0 |
ftgl |
2.1 |
fxtract |
2.3 |
G |
|
gamess |
16srs1, 16srs1-v2, 2018r3 |
ganon |
0.3.3 |
gap |
4.8.10 |
gatan |
free, uwa |
gatk |
3.4, 3.7, 4.0.1.1, 4.0.11.0, 4.1.2.0(default), 4.1.9.0, 4.2.2.0 |
gatktool |
0.0.1 |
gauss |
11.0, 19, 9.0 |
gaussian |
g16a03(default) |
gautomatch |
0.53, 0.56, 0.56_cuda10.1 |
gcat |
e48bf8b |
gcc |
10.2.0, 4.9.3, 5.4.0, 6.1.0, 8.1.0 |
gcta |
1.92.2beta |
gctf |
0.50, 0.66, 1.06, 1.06_cuda8, 1.06_cuda8-uow, 1.08_cuda8, 1.18, 1.18_b2, 1.18_b2_cuda9, 1.18_cuda10.1, 1.18_cuda8, 1.18_cuda8-uow, 1.18_cuda91 |
gd-devel |
2.0.35 |
gdal |
2.2.4, 2.3.1, 3.0.2 |
gdb |
8.2.1 |
gdcm |
2.6.6-gcc4, 2.6.6-gcc5 |
geant4 |
10.02.p03, 10.03.p01, 10.05.p01, 10.6 |
gem |
3.3 |
gemini |
0.30.1 |
genemark |
4.30 |
genesis |
1.5.1, 1.5.1-cpu |
gengetopt |
2.10 |
genometools |
1.6.1 |
genomicconsensus |
2.3.3 |
genotypeharmonizer |
1.4.20 |
genrich |
v0.6 |
geos |
3.6, 3.6.4, 3.7.2(default) |
gephi |
0.9.2 |
gflags |
master, master-gcc4 |
ghostscript |
9.26 |
gimp |
2.8, 2.8.22 |
gingerale |
2.3.6 |
git |
2.17.0, 2.19.0, 2.25.2, 2.8.1(default) |
git-annex |
6.20180227 |
glew |
2.0-gcc4, 2.0-gcc5 |
glm |
0.9.9.5 |
globus-cli |
2.0.0 |
glog |
master, master-gcc4 |
glpk |
4.60 |
gmp |
6.1.2, 6.2.1 |
gmsh |
3.0.3 |
gnuparallel |
20160822, 20190122 |
gnuplot |
5.2.1 |
go |
1.11.1, 1.13.8, 1.14.2 |
goctf |
1.1.0 |
gpu_burn |
0.9, 1.0 |
gpucomputingsdk |
4.0.17 |
graphviz |
2.30.1, 2.40.1 |
gromacs |
2016.3-openmpi-cuda8.0, 2016.4-openmpi-cuda8.0, 2016.5-openmpi-cuda8.0-plumed, 2018.4-openmpi-cuda8.0, 2018.7-openmpi-cpu-only, 2018.7-openmpi-cuda-plumed, 2018-openmpi-cuda8.0, 2018-openmpi-cuda8.0-NVML(default), 2019.4-openmpi-cuda10.0, 2020.1-openmpi-cuda10.1, 2021.2-openmpi-cuda10.1, 2021.4-cpuonly, 5.1.4, gromacs-2021.4-hpcx-cpuonly-gcc8 |
groot |
0.8.6, 1.0.2 |
gsl |
1.15.13-system, 2.2-gcc4(default), 2.2-gcc5, 2.2-system, 2.5-gcc4, 2.7 |
gst-devel |
1.4.5 |
gst-libav |
1.10.4, 1.4.5 |
gtdb-tk |
0.3.2, 1.3.0(default), 1.5.0 |
gubbins |
2.3.2, 2.4.1 |
guppy |
3.1.5-1, 3.2.4, 3.5.2-gpu, 4.0.14-gpu, 5.0.7-cpu, 5.0.7-gpu, container |
gurobi |
7.5.1, 8.0.0, 9.0.0, 9.0.1, 9.1.0 |
gvcftools |
0.17.0 |
H |
|
h5toxds |
1.1.0 |
hal |
2.1 |
halper |
2020-08-06 |
hapflk |
1.4 |
haplomerger2 |
20180603 |
hapsolo |
0.1 |
haystack_bio |
0.5.5 |
hddm |
0.6.0 |
hdf5 |
1.10.0-patch1, 1.10.5 |
hdfview |
3.1.1(default) |
heudiconv |
0.5.4 |
hisat2 |
2.1.0 |
hmmer |
2.4i, 3.2.1, 3.3.1 |
holt-lab |
20210205, 20210321 |
homer |
4.11 |
horovod |
0.16.4 |
hotspot |
4.0.0 |
hpcx |
2.5.0-redhat7.6, 2.5.0-redhat7.7, 2.9.0-redhat7.7, 2.9.0-redhat7.7-mt |
htop |
2.0.1 |
htseq |
0.10.0 |
htslib |
1.7, 1.9, 1.9-gcc5 |
humann |
2.0 |
huygens |
16.10.1-p1 |
hyperspy |
1.4 |
hyphy |
2.5.0 |
hypre |
2.11.2, 2.15.0 |
I |
|
icm |
3.7-3b, 3.8.7 |
idl |
8.6, 8.7, 8.7-nov, 8.8.1 |
idr |
2.0.3 |
igv |
2.3.81, 2.4.19 |
ihrsr++ |
v1.5 |
ilastik |
1.2.0, 1.3.3(default), 1.3.3post3, 1.4.0b5 |
illumina-utils |
2.6, 2.6-python3.7 |
imagej |
20160205 |
imagemagick |
7.0.5-7, 7.0.8-23, 7.0.8.23-native(default), 7.0.9-27-gcc8 |
imagescope |
11.2.0.780 |
imblproc |
20190405 |
imod |
4.8.54, 4.9.12, 4.9.9 |
imod-raza |
4.7.12 |
imosflm |
7.2.1, 7.2.2 |
impute2 |
2.3.1 |
infernal |
1.1.4 |
intel |
2015.0.090, 2016, 2017u4, 2018test, 2018u3 |
interproscan |
5.51-85.0 |
ior |
3.2.1 |
ipopt |
3.14.4 |
iqtree |
1.5.3, 1.6.10, 1.6.2, 2.0.4-rc, 2.0-rc1(default) |
ismapper |
2.0 |
itasser |
5.1 |
itk |
4.10.0-gcc4, 4.10.0-gcc5, 4.10.0-gcc5-p1, 4.13.0-gcc4, 4.13.1-gcc4, 4.8.2-gcc4, 4.8.2-gcc5, ansto |
itksnap |
3.3.x(default), 3.8.0, 3.8.0-beta |
J |
|
jags |
3.3.0, 3.4.0, 4.3.0(default), 4.3.0-gcc8 |
janni |
0.2 |
java |
openjdk-1.14.02, openjdk-1.8.0_242(default) |
jbigkit |
2.1 |
jbrowse |
1.16.10(default) |
jdk |
10-20180320, 14 |
jellyfish |
1.1.12, 2.3.0(default), 2.3.0-gcc5 |
jq |
1.6 |
jspr |
2017-7-20 |
juicer |
1.6.2 |
julia |
0.6.4, 1.3.1(default), 1.5.3, 1.6.1 |
K |
|
kallisto |
0.43.0 |
kaptive |
0.5.1 |
kat |
2.4.2 |
kilosort |
1.0 |
kindel |
0.4.2 |
king |
2.1.6 |
kleborate |
0.2.0, 0.3.0 |
kma |
1.3.0 |
kraken |
1.1.1 |
kraken2 |
2.0.7-beta(default), 2.1.2 |
krakenuniq |
0.5.8 |
kronatools |
2.7.1 |
kul_vbg |
20201103, e46effe |
L |
|
lammps |
20180510(default), 20181212, 20200303, 20200303-python3 |
lapack |
3.10.0-gcc8, 3.6.1-gcc4, 3.6.1-gcc4-opt, 3.6.1-gcc5, 3.8.0-gcc5, 3.8.0-gcc5-pic |
lbpm |
fde6af1 |
ldmap |
28apr15 |
ldpred |
1.0.6 |
leveldb |
master, master-gcc4 |
levelset |
0.0.2(default) |
libcublas |
10.2.1.243-cuda10 |
libertem |
0.5.1, 0.6.0, 20190521 |
libffi |
3.2.1 |
libffi-devel |
3.0.13 |
libfuse |
3.6.1 |
libgd |
2.2.4 |
libgeotiff |
1.4.2 |
libgit2 |
1.1.0 |
libharu |
2.2.1 |
libint |
1.1.4 |
libjpeg-turbo |
1.4.2, 1.5.1, 1.5.1-shared |
libmaus |
0.0.196 |
libmaus2 |
2.0.704 |
libsmm |
20150702 |
libssh2 |
1.9.0 |
libtiff |
3.9.7, 4.0.10 |
libunwind |
1.3.1 |
libuuid |
2.23.2-43 |
libxc |
4.1.0 |
libxp |
1.0.2 |
libxsmm |
1.9 |
libzip |
0.10.1-8 |
liggghts |
3.8.0 |
lighter |
1.1.2 |
lkh |
2.0.9 |
lmdb |
latest |
locarna |
1.9.2.3 |
locuszoom |
1.4(default), 1.4.fixed |
lofreq |
2.1.3.1 |
lsd |
0.3beta |
lumpy-sv |
0.2.13 |
M |
|
macs |
3.0.0a5 |
macs2 |
2.1.1.20160309 |
mafft |
7.310 |
mageck |
0.5.9.4 |
magic-impute |
1.5.5 |
magicblast |
1.5.0 |
magma |
1.6.1, 2.0.2 |
mainmast |
1.0 |
make |
4.3 |
maker |
3.01.03 |
malpem |
1.2(default) |
mango |
4.0.1 |
manta |
1.5.0-gcc5 |
mantid |
3.13.0, 3.8.0, 3.9.0 |
mapdamage |
2.0.9(default), 2.0.9-u1 |
mash |
2.1(default), 2.1.1, 2.2 |
materialsstudio |
18.1.0 |
mathematica |
12.1.1(default) |
mathgl |
1.11.2, 2.0.3(default), 2.3.3 |
matlab |
r2012b, r2014a, r2014b, r2015b, r2016a, r2017a, r2017b, r2017b-caffe, r2018a, r2019a, r2019b(default), r2020a, r2020b, r2021a |
mauve |
20150213 |
maven |
3.3.9 |
maxquant |
1.6.5.0 |
mc |
4.8.21 |
mcl |
11-294 |
mcorr |
b7481e1 |
mcr2010b |
1.0 |
mcscanx |
97e74f4 |
megahit |
1.1.3, 1.2.4-beta, 1.2.9 |
meld |
0.4.14 |
melt |
2.2.2 |
meme |
5.0.1 |
merantk |
1.2.1 |
mercurial |
4.7.1 |
mesa |
13.0.5, 21.3.1, default |
meshlab |
2016.12-gcc5, 2019.03 |
meson |
0.51.0, 0.59.2 |
metabat |
2.15.5 |
metabolic |
4.0 |
metacache |
1.1.1 |
metal |
2011 |
metaphlan |
2.0, 3.0-sif(default) |
metaplotr |
2018_09 |
metawrap |
1.1.3 |
metis |
5.1.0 |
mevislab |
2.8.1-gcc-64bit |
miakat |
4.2.6 |
minc-lib |
2.2-git-gcc4 |
minc-tools |
2.2 |
miniasm |
0.3 |
miniconda3 |
4.1.11-python3.5, 4.8.3-python3.8, 4.9.2-python3.9 |
minimap2 |
2.17-r954-dirty, 2.1.8 |
minipolish |
0.1.3 |
minizinc |
2, 2.3.1, 2.5.2 |
mir-prefer |
0.24 |
mixcr |
3.0.7 |
mkl |
2018u3 |
mlst |
2.15 |
mne |
TF-201804 |
molden |
5.7 |
mono |
5.20.1.19 |
moose |
1.0, 1.0-vtk |
morphind |
1.4 |
mosek |
9.2.38 |
motif |
2.3.4 |
motioncor2 |
20180924, 20181020, 20181020-cuda91, 2.1, 2.1.10-cuda8, 2.1.10-cuda9.1, 2.1.3.0-cuda101, 2.1.3.0-cuda80, 2.1.4.0-cuda101, 2.1.4.2-cuda101 |
motioncorr |
2.1 |
motioncorr2 |
20160822 |
mpfr |
3.1.5 |
mpifileutils |
20170922, 20200701 |
mpip |
3.4.1 |
mplus |
8.6 |
mrbayes |
3.2.6, 3.2.6-mpi |
mrf |
0.2.2(default) |
mriconvert |
2.1.0 |
mricrogl |
1.0.20170207, 20180623 |
mricron |
06.2013, 30apr2016 |
mriqc |
0.14.2, 0.15.2.rc1, 0.9.7 |
mrpeek |
preview2 |
mrtrix |
0.3.15-gcc4, 0.3.15-gcc5, 0.3.16, 20170712, 3.0.0, 3.0.1, 3.0.2, 3.0.3, 3.0_rc3, 3.0_rc3_latest |
mrtrix3tissue |
5.2.8, 5.2.8-ubuntu, 5.2.9 |
msm_hocr |
3.0 |
multiwfn |
3.8, 3.8_dev_20210627 |
mummer |
3.23-gcc5, 4.0.0.beta2-gcc5 |
muscle |
3.8.31 |
mustem |
5.3 |
mxtools |
0.1 |
mydata |
0.9.2, 0.9.2-20201020(default) |
mydata-python |
20200603 |
mykrobe |
0.8.1 |
mytardis |
0.1(default) |
mytardisclient |
20200603 |
N |
|
namd |
2.12-ibverbs-smp-cuda, 2.12-multicore, 2.13-multicore, 2.13-multicore-CUDA, 2.14-multicore, 2.14-multicore-cuda |
nanconvert |
latest |
nanofilt |
201807 |
nanopolish |
0.10.1, 0.11.1 |
nasm |
2.15.03 |
nccl |
2.10.3-cuda11.0, 2.4.7-cuda10.0, 2.4.7-cuda9.1, master, master-gcc4 |
netcdf |
4.4.1.1(default), 4.4.1.1-openmpi-1.10.7-mlx, 4.7.0, 4.7.1-intel |
netpbm |
10.0 |
neuro-workshop |
20191115 |
neuro_workflow |
2017v2 |
new-fugue |
2010-06-02 |
newick-utils |
1.6 |
nextflow |
21.04 |
nextgenmap |
0.5.5 |
ngsadmix |
32 |
ngsqctoolkit |
2.3.3 |
ngstools |
14b68ed |
nibabel |
2.3.3 |
niftilib |
2.0.0 |
nighres |
1.1.0b1 |
niistat |
9.oct.2016 |
nilearn |
0.6.2(default) |
ninja |
1.10.2, 1.9.0 |
nis-elements-viewer |
4.20 |
nlopt |
2.6.1, 2.6.1-gcc4, 2.6.1-gcc5 |
nn |
0.2.4(default) |
novactf |
03.2018 |
nsight |
2019.5.0 |
nullarbor |
2.0.20181010, 2.0.20191013 |
nvidia-sdk |
21.9, 21.9-byo-compiler, 21.9-nompi |
O |
|
objexport |
0.0.4(default) |
octave |
4.2.2 |
octopus |
8.4, 8.4-parallel |
omero.insight |
5.5.10 |
omsimulator |
2.0.1 |
openbabel |
2.4.1 |
openblas |
0.2.20 |
openbugs |
3.2.3 |
opencv |
3.4.1, 3.4.10-gcc5, 3.4.11, 3.4.1-gcc4, 4.1.0, 4.4.0 |
openexr |
2.5.5 |
openface |
2.2.0 |
openfoam |
4.1, 5-paraview54, 5.x, v1912 |
openjpeg |
2.3.0, 2.3.1 |
openmm |
7.4(default), 7.5 |
openmm-velocity-verlet |
6cebae3, 7.4 |
openmodelica |
1.14.2 |
openmpi |
1.10.3-gcc4-mlx, 1.10.3-gcc4-mlx-cuda75, 1.10.3-gcc4-mlx-verbs, 1.10.3-gcc4-mlx-verbs-cuda75, 1.10.3-gcc5, 1.10.3-gcc5-mlx, 1.10.7-1.mlx, 1.10.7-intel, 1.10.7-mlx(default), 1.10.7-mlx-intel, 2.1.6-mlx-intel, 3.1.4-mlx, 3.1.6-ucx, 4.1.2-ucx |
opennmt-py |
0.7.0 |
openpose |
1.6.0 |
openrefine |
3.1 |
openslide |
3.4.1 |
optitype |
1.3.5 |
orange3 |
ansto |
orca |
4.0.1(default), 4.2.1, 4.2.1-216 |
orfm |
v0.7.1 |
osg |
3.6.5 |
otpo |
1.0 |
P |
|
packer |
1.3.5 |
paleomix |
1.2.13.4-python2 |
paml |
4.9 |
panaroo |
1.1.2, 1.2.4 |
pandoc |
2.7.3 |
paraview |
4.0.1, 5.6.0, ansto |
parliament2 |
0.1.11 |
parsyncfp |
1.67 |
partitionfinder2 |
2.1.1 |
pastml |
1.0 |
pbh5tools |
2018-12-13 |
pbzip2 |
1.1.13 |
pcangsd |
1.03 |
peakseq |
1.3.1 |
perl |
5.24.0, 5.28.0(default), 5.30.1, 5.32.1 |
petsc |
3.10.1-gcc5, 3.12.1, 3.13.2-gcc5 |
pgap |
3958 |
pgi |
2019, 2020 |
phate |
0.4.4 |
phenix |
1.11.1, 1.15.1, 1.15.2, 1.18.2 |
phreeqc |
3.5.0 |
phyloflash |
3.4 |
phyml |
3.1 |
picard |
2.19.0(default), 2.25.6, 2.9.2 |
picrust2 |
2.1.4_b(default), 2.2.0_b |
pigz |
2.3.3, 2.3.4 |
pilon |
1.22 |
pindel |
0.6.3-gcc5 |
plasclass |
b80a4f4(default) |
plasmidfinder |
2.1 |
plink |
1.7, 1.9, 1.90b6.10, 2.0-alpha |
plinkseq |
0.10 |
plumed |
2.5.0 |
pmix |
3.1.2, v2.2 |
pointless |
1.10.28 |
posgen |
0.0.1(default) |
posminus |
0.2.3(default) |
pplacer |
v1.1.alpha19 |
prank |
170427 |
prismatic |
1.1 |
prismatic-cpu |
1.1 |
prodigal |
2.6.3 |
proj |
4.9.3, 5.1.0, 6.2.1(default), 8.1.1 |
prokka |
1.13.3(default), 1.14.5, 1.14.6 |
protobuf |
master, master-gcc4 |
protomo |
2.4.2 |
psi4 |
v1.1, v1.3.2 |
psortb |
3.0 |
psortm |
3.0 |
pulchra |
3.06 |
purge_dups |
1.2.5 |
purge_haplotigs |
1.1.0 |
pv |
1.6.6 |
py4dstem |
0.11.5, 0.3 |
pybids |
0.9.1 |
pycharm |
2018.3.3 |
pydeface |
1.1.0 |
pydicom |
1.4.2(default) |
pyem |
v0.1, v0.1-201806, v0.3, v0.5 |
pymol |
1.8.2.1, 1.8.6, 2.4.0 |
pyprismatic |
1.1.16, 1.2.1 |
pypy |
7.0.0-3.6 |
pysam |
0.15.2-python2 |
pyscenic |
0.10.0(default), 0.9.18 |
python |
2.7.11-gcc, 2.7.12-gcc4(default), 2.7.12-gcc5, 2.7.15-gcc5, 2.7.17-gcc8, 2.7.18-gcc5, 2.7.18-ucs4-gcc5, 3.5.2-gcc, 3.5.2-gcc4, 3.5.2-gcc5, 3.6.2, 3.6.2-static, 3.6.6-gcc5, 3.7.2-gcc6, 3.7.3-system, 3.8.5, 3.8.5-gcc8, 3.8.5-gcc8-static |
pytom |
0.971 |
pytorch |
1.0-cuda10, 1.1-cuda10(default), 1.3-cuda10, 1.5-cuda10, 1.6-cuda10 |
pyxnat |
1.1.0.2, 20170308 |
Q |
|
qatools |
1.2 |
qctools |
v2.0-beta |
qgis |
3.9.0 |
qhull |
2003.1, 2015.2 |
qiaseq-dna |
1.0(default), 14.1 |
qiime1 |
1.9.1 |
qiime2 |
2017.9, 2018.11, 2018.2, 2018.4, 2019.1, 2019.4, 2019.7-q2_scnic, 2019.7-q2_scnic_2, 2020.8 |
qit |
2148 |
qt |
5.7.1-gcc5 |
qt5-qtwebkit |
5.9.1 |
quantumespresso |
6.8, 6.8-gpu |
quicktree |
2.0, 2.5 |
quit |
1.1, 2.0.2 |
qupath |
0.2.0-m4 |
R |
3.3.1, 3.4.3, 3.5.0, 3.5.1, 3.5.2-openblas, 3.5.3-mkl, 3.6.0-mkl(default), 3.6.2-mkl, 4.0.0-openblas, 4.0.5, 4.1.0-mkl |
R |
|
r-launcher |
0.0.1(default) |
racon |
1.3.1, 1.4.3 |
raremetal |
4.15.1 |
raven |
1.1.10 |
raxml |
8.2.12, 8.2.9 |
raxml-ng |
1.0.0 |
razers3 |
3.5.8 |
rclone |
1.49.3, 1.55.1 |
rdf-kd |
0.0.1(default) |
rdkit |
2019.03.3.0 |
readline |
7.0 |
relion |
1.4, 2.02, 2.0.6, 2.0beta, 2.1(default), 2.1.b1, 2.1.b2, 2.1-openmpi-1.10.7-mlx, 3.0-20181109-cuda80, 3.0-20181109-cuda91, 3.0-20190115, 3.0.5, 3.0.5-uow, 3.0.6, 3.0.6-uow, 3.0.7, 3.0.7-uow, 3.0.7-uow-cuda10.1, 3.0.7-uow-mc2.1.3.0, 3.0-beta, 3.0-stable, 3.0-stable-cuda91, 3.0-stable-uow, 3.0-uow-20180904, 3.0-uow-20180917, 3.0-uow-20181109-cuda80, 3.0-uow-20181109-cuda91, 3.0-uow-20190115, 3.1.0, 3.1.0-uow, 3.1.0-uow-v2, 3.1.2, 3.1_beta, 3.1_beta-20191105, 3.1_beta-20191113, 3.1_beta-20200109, 3.1_beta-latest, ver3.1_20200904, ver3.1_20200925, ver3.1_20201028, ver3.1_20201102 |
repeatmasker |
4.1.1 |
resmap |
1.1.4, 1.1.5, 1.9.5 |
rest |
1.8, 1.8-matlab2017a.r6685 |
retools |
1.3 |
rgi |
5.1.0 |
rings |
1.3.3 |
rmblast |
2.10.0 |
rnammer |
1.2 |
roary |
3.11.2(default), 3.12.0 |
robex |
1.2 |
root |
5.34.32, 6.22.02 |
rosetta |
2018.09, 2020.08, 2020.37-mpi |
rpm2cpio |
4.16.1-fedora |
rsem |
1.3.0 |
rseqc |
3.0.0 |
rstudio |
1.0.143, 1.0.44, 1.1.414, 1.1.463, 1.1.463-r3.5.3-mkl, 1.1.463-r3.6.0-mkl, 1.4.1717 |
rstudioserver_epigenetics |
1.0, 1.0-20171101 |
rsync |
3.1.3 |
rtk |
ansto |
ruby |
3.0.1 |
S |
|
saintexpress |
3.6.3 |
salmon |
0.14.1(default), 1.5.2 |
salome |
9.2.0 |
sambamba |
0.8.0 |
samblaster |
0.1.26 |
samclip |
0.2 |
samtools |
0.1.18, 1.10, 1.3.1, 1.6, 1.7, 1.7-gcc5, 1.9, 1.9-gcc5 |
sas |
9.4 |
sbt |
0.13.15, 1.2.1 |
scalapack |
2.0.2 |
scipion |
2.0, devel, devel-20170327, v1.0.1_2016-06-30, v1.1, v1.1.1, v1.2, v1.2.1, v1.2.1_2018-10-01 |
scrappie |
1.4.1 |
sdm_1d_calculate |
2.0.2(default) |
sdm_1d_plot |
0.0.4(default) |
sdm_2d_calculate |
2.0.2(default) |
sdm_2d_plot |
0.0.4(default) |
seacr |
1.3 |
segadapter |
1.9 |
seqgen |
1.3.4 |
seqtk |
1.3 |
shapeit |
v2_r837, v2_r904 |
shovill |
1.0.4 |
shrimp2 |
2.2.3 |
sidesplitter |
120220, 20201028 |
silo |
4.10.2 |
simnibs |
2.0.1g, 3.1.2 |
simple |
2.1, 2.5 |
simul-atrophy |
12-09-2017, rjbcompilepetscmaster-04032020, RJBCompilePetscMaster-190220 |
singlem |
0.12.1 |
singularity |
2.3.1, 2.4.2, 2.4.5, 2.5.2, 3.0, 3.0.1, 3.0.2, 3.1.0, 3.2.0, 3.2.1(default), 3.4.0, 3.5.2, 3.5.3, 3.7.1, d3d0f3fdc4390c7e14a6065543fc85dd69ba42b7 |
situs |
3.1 |
ska |
1.0-e1968f0 |
skesa |
2.2.1, 2.3(default) |
skewer |
20170212 |
slamdunk |
latest |
slim |
3.2, 3.3.1 |
slurm |
17.11.4 |
smafa |
0.5.0 |
smcounter |
10apr2017 |
smux |
0.0.1 |
snap |
2013-11-29 |
snappy |
master, master-gcc4 |
snippy |
4.3.8, 4.4.5 |
snoscan |
1.0 |
snp-dists |
0.6.3 |
snp-sites |
2.5.1 |
snpeff |
4.3t |
snpm |
13 |
soapdenovo2 |
2.04-r241 |
sortmerna |
2.1b |
sourcetracker |
2.0.1 |
spaceranger |
1.3.0 |
spades |
3.12.0, 3.13.1, 3.15.3 |
sparseassembler |
1.0 |
sparsehash |
2.0.3 |
spectra |
0.8.1 |
speedseq |
0.1.2 |
spider |
21.11 |
spm12 |
matlab2015b.r6685, matlab2018a.r6685, matlab2018a.r7487, matlab2021a.r7771 |
spm8 |
matlab2015b.r6685, matlab2017a.r6685 |
spring |
0.86.1661, 0.87.1723 |
spss |
26 |
sqlite3 |
3.30.1 |
squashfs-tools |
4.3-0.21 |
squashfuse |
0.1.103 |
sra-tools |
2.7.0, 2.9.2, 2.9.4, 2.9.6 |
srst2 |
0.2.0, 0.2.0-2019 |
stacks |
2.4 |
star |
2.5.2b, 2.7.9a |
star-fusion |
1.9.1 |
stata |
14(default), 14.2, 16, 16u2021 |
stisuite |
3.0 |
strelka |
2.8.4 |
stringtie |
1.3.5, 1.3.6, 2.1.5 |
structure |
2.3.4 |
subread |
1.5.1, 2.0.1 |
subversion |
1.9.5 |
suitesparse |
5.4.0 |
sumo |
1.5.0 |
superlu |
3.1 |
surfice |
7_feb_2017 |
svd |
1.4 |
svim |
1.4.0 |
svs |
8.8.3 |
swig |
3.0.12, 4.0.1 |
synb0 |
v1.1(default) |
synopsys |
3.1(default) |
synthseg |
1c9995e |
T |
|
tannertools |
2016.1, 2016.2 |
tapsim |
v1.0b_r766 |
tbb |
20180312oss |
tempest |
1.5 |
tensorflow |
1.0.0-python2.7.12-gcc5, 1.10.0-pytorch, 1.10.0-pytorch-all, 1.10.0-pytorch-keras, 1.12.0-python2.7.12-gcc5, 1.12.0-python3.6-gcc5, 1.13.1-gdal, 1.14.0-keras, 1.14.0-keras-pydicom, 1.15.2-gpu, 1.15.2-python3.7.3-gcc8, 1.3.0-python2.7.12-gcc5, 1.4.0-python2.7.12-gcc5, 1.4.0-python3.6-gcc5, 2.0.0-beta1, 2.0.0-gpu(default), 2.2.0, 2.3.0, 2.4.1 |
tensorrt |
6.0.1.5-cuda10, 7.0.0.11-cuda10, 7.2.1 |
terastitcher |
20171106 |
texlive |
2017 |
tiff |
4.0.8 |
tigervnc |
1.8.0 |
tmap |
3.0.1 |
tomowarp2 |
03f3ee8 |
toothmaker |
0.64 |
topaz |
1.0, latest, latest-uow |
tophat |
2.1.1 |
tracer |
1.6 |
trackvis |
0.6.1 |
tractseg |
2.0(default), 2.3 |
transdecoder |
5.5.0 |
trf |
4.09.1 |
trim_galore |
0.4.5, 0.5.0 |
trimmomatic |
0.38 |
trinity |
2.8.5(default), 2.8.5-gcc5 |
turbovnc |
2.0.2(default), 2.1.0 |
tvips-tools |
0.0.3 |
U |
|
ucsc-genome-tools |
201806 |
ucx |
1.6.1 |
udunits2 |
2.2.20-2 |
ufo-kit |
ansto |
umap |
0.3.8 |
umi-tools |
0.5.5-python2, 0.5.5-python3 |
unblur |
1.0.2 |
underworld |
2.3.0, 2.8.0b, 2.9.1b, 2.9.4b |
unicycler |
0.4.7 |
unimelb-mf-clients |
0.2.7, 0.3.2 |
unrar |
5.0 |
V |
|
v8 |
3.14.5.10-25 |
vaa3d |
3.601 |
valgrind |
3.13 |
vamb |
3.0.2 |
varscan |
2.3.9 |
vasp |
5.4.4(default), 5.4.4.eyk, 5.4.4-ucx |
vcftools |
0.1.15 |
vdjtools |
1.2.1 |
vegas2 |
v02 |
velvet |
1.2.10, 1.2.10-modified |
vep |
90(default), 94 |
viennarna |
2.4.15, 2.4.17 |
vigra |
1.9.0 |
vim |
8.0.0596, 8.2, 8.2-container |
viptreegen |
1.1.2 |
virsorter |
1.0.6 |
virtualgl |
2.5.0(default), 2.5.2, 2.6.2 |
visit |
2.12.3 |
visualqc |
0.5 |
vmd |
1.9.3, 1.9.4 |
volview |
3.4 |
voro++ |
0.4.6 |
vscode |
1.39.2(default), 1.53.2 |
vsearch |
2.13.6 |
vt |
0.57 |
vtk |
5.10.1, 5.10.1-gcc4, 7.0.0, 7.0.0-gcc5, 9.0.1 |
W |
|
wasp |
0.3.0 |
weblogo |
3.7 |
wfu_pickatlas |
3.0.5b |
wgsim |
0.3.1-r13 |
workspace |
4.0.2 |
wtdbg2 |
2.5 |
wxgtk |
3.0.2 |
wxwidgets |
3.0.3 |
X |
|
x2goclient |
4.1.2.1, 4.1.2.2 |
xcpengine |
1.2.3 |
xds |
20170302, 2020210205, monash(default), mxbeamteam |
xjview |
9.0, 9.6, 9.7 |
xnat-desktop |
0.96, 1.0.40 |
xnat-upload-assistant |
1.1.3 |
xnat-utils |
0.2.1, 0.2.5, 0.2.6, 0.4.5, 0.4.6, 0.4.9, 0.5.3, 0.5.5, 0.7.3 |
xnatpy |
0.3.18, 0.3.26 |
xvfb |
1.19.3 |
Y |
|
yade |
1.20.0-cpu, 1.20.0-gpu, 2019-06-20, 2019-06-20-cpu, yade-daily-may-2019 |
yasm |
1.2.0-4, 1.3.0 |
Z |
|
zetastitcher |
0.3.3 |
zlib |
1.2.11 |
zoem |
11-166 |
zoltan |
3.83 |
zonation |
4.0.0 |
zopfli |
1.0.3 |
zstd |
1.4.0 |