Installed software modulesΒΆ

Jump to software beginning with A B C D E F G H I J K L M N O P Q R S T U V W X Y Z.

Attention

Some software packages on M3 have license conditions that restrict access to the software to certain user groups. These software packages are marked with the restricted keyword. To apply for access to restricted software, log in to the HPC ID system and navigate to the Software section of your profile. To enquire about restricted software contact the MASSIVE Help Desk

Note

Software packages with a version named ansto are copies of the software installed on the ASCI facility

Software

Version(s)

3daprecon restricted

0.0.1, 1.0

3depict restricted

0.0.15

3dslicer

4.10.2, 4.6.0, 4.8.1

A

abaqus restricted

2016, 2019, 6.14

abinit

8.8.3

abricate

0.8.13

abyss

2.0.2

adapterremoval

2.3.1

adf

2019.104

adxv

1.9.12

afni

16.2.16, 17.0.11

agent

2.0.5

alfred

20210729

align2rawsignal

2.0

allpathslg

52488

alphafold

0bab1bf

amber restricted

18-multi-gpus, 18-parallel, 18-parallel-pmemd.gem, 18-serial, 18-single-gpu

amide

1.0.5

amira restricted

2020.2, 6.3.0, 6.4.0, 6.5.0

anaconda

2018.12-Python3.7-gcc6, 2019.03-Python3.7-gcc5, 2020.07-Python3.8-gcc8, 4.3.1-Python3.5, 4.3.1-Python3.5-gcc5, 5.0.1-Python2.7-gcc5, 5.0.1-Python3.5-gcc5, 5.0.1-Python3.6-gcc5, 5.1.0-Python3.6-gcc5(default)

analyze restricted

12.0

analyze-temp

12.0

ancestry_hmm

efca8ee

angsd

0.931, 0.931-realsfs

ansys restricted

18.1, 19.1, 19.2, 20r2

ants

1.9.v4, 20190910, 2.2.0, 2.3.1, 2.3.4

any2fasta

0.4.2

aocc

2.3.0

apbs

3.0.0

apex

latest

apr

1.6.5

apr-util

1.6.1

aretomo

1.0.1

argos

3.0.0-beta52

aria2c

1.35.0

ariba

2.12.1, 2.14.4

armadillo

9.200-rc1

arpack

2.1, 3.1.3-2

arrayfire

3.7.1

ascp

3.5.4

ashs

1.0.0

aslprep

0.2.7

astra-toolbox

1.9.9.dev4

atlas

3.10.2-gcc4, 3.10.2-gcc5

atom

1.39.1

atomprobedevcode restricted

1.0.0(default)

attr

2.4.46-12

augustus

3.3.3

autodock_vina

1.1.2

automake

1.16.1, 1.4-p6

autometa

2019-09

avizo restricted

2020.2, 9.0.1, 9.3.0, 9.3.0.1, 9.4.0, 9.5.0, 9.7

axel

2.12

B

bamsurgeon

1.2

bamtofastq

1.2.0

bamtools

2.4.1

barrnap

0.9

bart

0.4.04, 0.4.04-cuda9.0

bayenv

2.0

bayesass

1.3, 3.04, 3.0.4-snps

bayescan

2.1

baypass

2.2

bbcp

17.12

bbmap

38.81

bcbtoolkit

4.0.0

bcftools

1.11, 1.6, 1.7, 1.8

bcl2fastq

2.19.1

beagle

2.1.2, 3.1.2

beast1

1.10.0, 1.8.4

beast2

2.4.7, 2.4.8, 2.5.0, 2.6.3

bedops

2.4.39

bedtools

2.26.0, 2.26.0-gcc5, 2.27.1-gcc5, 2.29.2, 2.30.0

bgen

1.1.4

bids-validator

1.3.1, 2019.01

bidscoin

2.2, 3

bigdatascript

v0.99999e

bigwigtowig

377-0

bilm-tf

1.0

biobambam

0.0.191

biobambam2

2.0.146

biobloom

2.3.3

biogrinder

0.5.4

biscuit

0.2.2, 0.3.8.20180515

bismark

v0.19.1

bison

2.7.1

blas

3.10.0-gcc8, 3.8.0-gcc5, 3.8.0-gcc5-pic

blast

2.2.30, 2.3.0, 2.7.1(default)

blast+

2.9.0

blat

37

blender

2.81, 2.90.1(default), 2.92

bliss

0.73

bolt-lmm

2.3.2, 2.3.4

boost

1.46.0-gcc5, 1.46.1-gcc5, 1.52.0-gcc5, 1.58.0, 1.58.0-gcc5, 1.62.0, 1.62.0-gcc4, 1.67.0-gcc5, 1.72.0-gcc8, 1.76.0

bowtie

1.1.2

bowtie2

2.2.9, 2.3.5

bracken

2.5

brain_age

v1.0_18Jan2018

braker

2.1.6

breseq

0.29.0, 0.33.2

bsoft

1.9.2, 2.0(default)

busco

3.0.2(default), 5.1.3

buster

20170508

bwa

0.7.12, 0.7.17-gcc5

bwa-meth

0.2.2

bzip2

1.0.6

C

cactus

1.0.0

caffe

1.0.0, 1.0.0-protbuf32, caffe-matlab, caffe-tsn, deepvistool, latest(default), rc4

caffe2

0.8.1

caffe_enet

1.0

caffe_unet

1.0, 18.04, 2.0

camino

2020-09-21

canu

1.7.1

caret

5.65

caw restricted

0.2.4(default)

cblas

20032302-gcc5

ccp-em

1.3.0, nightly-20210608

ccp4

7.0, 7.0.072, ccp4i, ccp4i2, ccp4mg, coot

cdhit

4.8.1

cdo

1.9.8

cellprofiler

2.2.0, 3.1.5, 3.1.9

cellprofileranalyst

2.2.0

cellranger

2.0.1, 3.0.2(default), 6.0.0, 6.1.1

centrifuge

1.0.4-beta

cfdem

march2021

checkm

1.1.3

checkv

0.7.0

chimera

1.10.2, 1.11, 1.13, 1.14

chimerax

0.6, 0.8, 0.91, 0.93, 1.1(default)

chrome

68, 69, 75, 77, 78, 80, 80.0.3987.163, 88.0.4324, 89.0.4389.72, 90.0.4430.93, default

chuffed

0.10.3

circos

0.69-6

cistem

0763183(default), 0aabb63_20210505, 1.0.0-beta, 74d697f

civet

2.1.1(default)

clairvoyante

1.02

clamms

1.1

clonalframeml

1.11

cloudcompare

2.11.2

cloudstor

2.3.1-1.1, 2.4.1, 2.4.2

clustal-omega

1.2.4

cmake

2.8.12.2, 2.8.12.2-gcc5, 3.10.2-gcc4, 3.10.2-gcc4-system, 3.10.2-gcc5, 3.15.1-gcc4-system, 3.15.1-gcc5, 3.15.4-gcc8, 3.21.3-gcc8, 3.5.2, 3.5.2-gcc4, 3.5.2-gcc5

cmkl

9.1.023

cnvkit

0.9.5

cnvnator

0.4.1

colmap

3.6

comsol restricted

5.2a, 5.4, 5.4-ee

conda-install

latest

connectome

1.2.3(default)

convert3d

1.0.0

coot

0.8.9.1

coventormp

1.002

cp2k

5.1.0, 6.1.0, 8.1.0

cplex restricted

12.10.0(default), 12.6, 12.6.3, 12.7.1, 12.8.0, 20.1

cpmd

3.17.1, 4.3

crisprcasfinder

1.05

crisprdetect

2.2

crispresso

1.0.13-gcc5

crossmap

0.3.5, 0.3.6

cryo-em-processing-tool

0.1

cryoef

1.1.0

cryolo

1.0.0, 1.1.3, 1.3.1, 1.4.0, 1.4.1, 1.5.3, 1.5.6, 1.6.0, 1.7.2(default), 1.7.6

cryosparc

beta, cryosparc-cluster, v2

crystallography restricted

0.0.3(default)

cst

2017

ctffind

4.0.17, 4.1.10, 4.1.13, 4.1.14, 4.1.3, 4.1.4, 4.1.8

ctftilt

latest

cuda

10.0, 10.1(default), 11.0, 11.1, 11.4, 4.1, 4.1.bajk, 6.0, 7.0, 7.5, 8.0, 8.0.61, 8.0-DL, 9.0, 9.1

cudadeconv

1.0

cudalibs8to9

0.1

cudnn

5.1, 5.1-DL, 7.1.2-cuda8, 7.1.3-cuda9, 7.3.0-cuda9, 7.6.5.32-cuda10, 7.6.5-cuda10.1, 8.0.5-cuda10.1, 8.0.5-cuda11, 8.2.4

cufflinks

2.2.1

cunit

2.1.3

cutadapt

0.16, 2.5, 2.7, 3.3

cytoscape

3.4.0

D

dada2

1.14

daris-utils

1.0

darknet

alexey, darknet_yolo_v3, latest

dcm2niix

1.0.20200331, 1.0.20201102, 1.0.20210317, latest

dcmtk

3.6.3

deep-complex-networks

2017

deepemhancer

2020-09-09

deepgraph

0.2.3

deeplabcut

latest

deepmedic

0.6.1, 0.7.0

deeptools

3.1.2, 3.1.3

deepvariant

0.8-cpu, 0.8-gpu

dense3dcrf

20160527

desmond

2021.1

detectron

20180322

detectron2

0.3(default)

dftbplus

18.2

dftd3

0.9

dials

1.12.1, 1.5.1

diamond

0.9.22

dicomnifti

2.32.1

diyabc

2.1.0

dke

latest, latest-ft

dlib

19.20

dmtcp

2.5.2

dominate

2.3.5

dos2unix

7.4.0

dragondisk

1.0.5

drep

3.0.0

drishti

2.6.3, 2.6.4, ansto

drmaa

1.0.7, 1.1.0

dsistudio

latest

dsuite

6695c6b

dti-tk

2.3.1

dtk

0.6.4.1

duphold

0.2.3(default)

dwarfs

0.5.5

dynamo

1.1.178(default), 1.1.451

dynet

2.1-cpu, 2.1-gpu

E

ea-utils

1.1.2, 1.1.2-gcc5

eclipse

4.7.3a, 4.8

effoff restricted

0.2.1(default)

eigen

2.0.17, 3.2.9, 3.3.0, 3.3.7

eigensoft

7.2.1

eiger2cbf

1.0

elastix

5.0.0

elf

1.0

eman

2.12, 2.2, 2.22, 2.3, 2.3.1(default), 2.9, 2.91

emap-galaxy-shortcut

1.0.0(default)

emap-mytardis-shortcut

1.0.0(default)

emap-wiki-shortcut

0.0.1(default)

emapaccess

1.0(default)

emboss

6.6.0

emclarity

1.0.0(default), 1.4.3

emspring

spring_v0-84-1470, spring_v0-84-1470_mlx

epacts

3.3.2

epu_group_afis

0.3

exciting

nitrogen

exonerate

2.4.0

expansionhunter

4.0.2(default)

expansionhunterdenovo

0.9.1

exploredti

4.8.6

F

fasta36

36.3.8(default)

fastani

1.1, 1.33

fastml

3.1, 3.11

fastp

0.20.0

fastqc

0.11.7, 0.11.9

fastQValidator

0.1.1a

fastspar

0.0.7

faststructure

1.0

fastsurfer

c5894bd

fasttree

2.1.10

fastx-toolkit

0.0.13

fcsalyzer

0.9.12

fdtd

2020a-r1, 2021-r2-2717, 8.21.1933

feedback

1.0.1(default)

ffmpeg

3.4.2, 4.3.1

fftw

3.3.4-gcc, 3.3.5-gcc, 3.3.5-gcc5

fgbio

0.9.0

figtree

1.4.3

fiji

20160808, 20170223, 20170530, ansto, current, current.bak, fiji-super-res, MMI-MHTP, vis2021

filtlong

0.2.0

fix

1.064, 1.068

flash

1.2.11-gcc5

flashpca

2.0

flexbar

3.4.0

flye

2.3.5, 2.8

fmriprep

1.0.15, 1.1.1, 1.2.5, 1.3.0_post2, 1.4.0, 1.4.1, 1.5.8, 20.2.1, 20.2.3

foma

0.9.18

fooof

0.1.3, 1.0.0

fouriertransform restricted

0.2.3(default)

fox

1.6.57

fpart

1.2.0

freebayes

0.9.9

freec

11.5

freesurfer

20160922, 5.3, 6.0, 6.0.0-brainvolstatsfixed, 6.0-patch, 7.1.0, devel-20171013, devel-20180612, devel-20190128

frustum

xflx1992

fsl restricted

5.0.11, 5.0.9, 6.0.0, 6.0.1, 6.0.3, 6.0.4

fsleyes

0.22.4, 0.23.0, 0.24.3, 0.32.0

ftgl

2.1

fxtract

2.3

G

gamess

16srs1, 16srs1-v2, 2018r3

ganon

0.3.3

gap

4.8.10

gatan

free, uwa

gatk

3.4, 3.7, 4.0.1.1, 4.0.11.0, 4.1.2.0(default), 4.1.9.0, 4.2.2.0

gatktool

0.0.1

gauss restricted

11.0, 19, 9.0

gaussian restricted

g16a03(default)

gautomatch

0.53, 0.56, 0.56_cuda10.1

gcat

e48bf8b

gcc

10.2.0, 4.9.3, 5.4.0, 6.1.0, 8.1.0

gcta

1.92.2beta

gctf

0.50, 0.66, 1.06, 1.06_cuda8, 1.06_cuda8-uow, 1.08_cuda8, 1.18, 1.18_b2, 1.18_b2_cuda9, 1.18_cuda10.1, 1.18_cuda8, 1.18_cuda8-uow, 1.18_cuda91

gd-devel

2.0.35

gdal

2.2.4, 2.3.1, 3.0.2

gdb

8.2.1

gdcm

2.6.6-gcc4, 2.6.6-gcc5

geant4

10.02.p03, 10.03.p01, 10.05.p01, 10.6

gem

3.3

gemini

0.30.1

genemark

4.30

genesis

1.5.1, 1.5.1-cpu

gengetopt

2.10

genometools

1.6.1

genomicconsensus

2.3.3

genotypeharmonizer

1.4.20

genrich

v0.6

geos

3.6, 3.6.4, 3.7.2(default)

gephi

0.9.2

gflags

master, master-gcc4

ghostscript

9.26

gimp

2.8, 2.8.22

gingerale

2.3.6

git

2.17.0, 2.19.0, 2.25.2, 2.8.1(default)

git-annex

6.20180227

glew

2.0-gcc4, 2.0-gcc5

glm

0.9.9.5

globus-cli

2.0.0

glog

master, master-gcc4

glpk

4.60

gmp

6.1.2, 6.2.1

gmsh

3.0.3

gnuparallel

20160822, 20190122

gnuplot

5.2.1

go

1.11.1, 1.13.8, 1.14.2

goctf

1.1.0

gpu_burn

0.9, 1.0

gpucomputingsdk

4.0.17

graphviz

2.30.1, 2.40.1

gromacs

2016.3-openmpi-cuda8.0, 2016.4-openmpi-cuda8.0, 2016.5-openmpi-cuda8.0-plumed, 2018.4-openmpi-cuda8.0, 2018.7-openmpi-cpu-only, 2018.7-openmpi-cuda-plumed, 2018-openmpi-cuda8.0, 2018-openmpi-cuda8.0-NVML(default), 2019.4-openmpi-cuda10.0, 2020.1-openmpi-cuda10.1, 2021.2-openmpi-cuda10.1, 2021.4-cpuonly, 5.1.4, gromacs-2021.4-hpcx-cpuonly-gcc8

groot

0.8.6, 1.0.2

gsl

1.15.13-system, 2.2-gcc4(default), 2.2-gcc5, 2.2-system, 2.5-gcc4, 2.7

gst-devel

1.4.5

gst-libav

1.10.4, 1.4.5

gtdb-tk

0.3.2, 1.3.0(default), 1.5.0

gubbins

2.3.2, 2.4.1

guppy

3.1.5-1, 3.2.4, 3.5.2-gpu, 4.0.14-gpu, 5.0.7-cpu, 5.0.7-gpu, container

gurobi restricted

7.5.1, 8.0.0, 9.0.0, 9.0.1, 9.1.0

gvcftools

0.17.0

H

h5toxds

1.1.0

hal

2.1

halper

2020-08-06

hapflk

1.4

haplomerger2

20180603

hapsolo

0.1

haystack_bio

0.5.5

hddm

0.6.0

hdf5

1.10.0-patch1, 1.10.5

hdfview

3.1.1(default)

heudiconv

0.5.4

hisat2

2.1.0

hmmer

2.4i, 3.2.1, 3.3.1

holt-lab

20210205, 20210321

homer

4.11

horovod

0.16.4

hotspot

4.0.0

hpcx

2.5.0-redhat7.6, 2.5.0-redhat7.7, 2.9.0-redhat7.7, 2.9.0-redhat7.7-mt

htop

2.0.1

htseq

0.10.0

htslib

1.7, 1.9, 1.9-gcc5

humann

2.0

huygens

16.10.1-p1

hyperspy

1.4

hyphy

2.5.0

hypre

2.11.2, 2.15.0

I

icm restricted

3.7-3b, 3.8.7

idl

8.6, 8.7, 8.7-nov, 8.8.1

idr

2.0.3

igv

2.3.81, 2.4.19

ihrsr++

v1.5

ilastik

1.2.0, 1.3.3(default), 1.3.3post3, 1.4.0b5

illumina-utils

2.6, 2.6-python3.7

imagej

20160205

imagemagick

7.0.5-7, 7.0.8-23, 7.0.8.23-native(default), 7.0.9-27-gcc8

imagescope

11.2.0.780

imblproc

20190405

imod

4.8.54, 4.9.12, 4.9.9

imod-raza

4.7.12

imosflm

7.2.1, 7.2.2

impute2

2.3.1

infernal

1.1.4

intel

2015.0.090, 2016, 2017u4, 2018test, 2018u3

interproscan

5.51-85.0

ior

3.2.1

ipopt

3.14.4

iqtree

1.5.3, 1.6.10, 1.6.2, 2.0.4-rc, 2.0-rc1(default)

ismapper

2.0

itasser

5.1

itk

4.10.0-gcc4, 4.10.0-gcc5, 4.10.0-gcc5-p1, 4.13.0-gcc4, 4.13.1-gcc4, 4.8.2-gcc4, 4.8.2-gcc5, ansto

itksnap

3.3.x(default), 3.8.0, 3.8.0-beta

J

jags

3.3.0, 3.4.0, 4.3.0(default), 4.3.0-gcc8

janni

0.2

java

openjdk-1.14.02, openjdk-1.8.0_242(default)

jbigkit

2.1

jbrowse

1.16.10(default)

jdk

10-20180320, 14

jellyfish

1.1.12, 2.3.0(default), 2.3.0-gcc5

jq

1.6

jspr

2017-7-20

juicer

1.6.2

julia

0.6.4, 1.3.1(default), 1.5.3, 1.6.1

K

kallisto

0.43.0

kaptive

0.5.1

kat

2.4.2

kilosort

1.0

kindel

0.4.2

king

2.1.6

kleborate

0.2.0, 0.3.0

kma

1.3.0

kraken

1.1.1

kraken2

2.0.7-beta(default), 2.1.2

krakenuniq

0.5.8

kronatools

2.7.1

kul_vbg

20201103, e46effe

L

lammps

20180510(default), 20181212, 20200303, 20200303-python3

lapack

3.10.0-gcc8, 3.6.1-gcc4, 3.6.1-gcc4-opt, 3.6.1-gcc5, 3.8.0-gcc5, 3.8.0-gcc5-pic

lbpm

fde6af1

ldmap

28apr15

ldpred

1.0.6

leveldb

master, master-gcc4

levelset restricted

0.0.2(default)

libcublas

10.2.1.243-cuda10

libertem

0.5.1, 0.6.0, 20190521

libffi

3.2.1

libffi-devel

3.0.13

libfuse

3.6.1

libgd

2.2.4

libgeotiff

1.4.2

libgit2

1.1.0

libharu

2.2.1

libint

1.1.4

libjpeg-turbo

1.4.2, 1.5.1, 1.5.1-shared

libmaus

0.0.196

libmaus2

2.0.704

libsmm

20150702

libssh2

1.9.0

libtiff

3.9.7, 4.0.10

libunwind

1.3.1

libuuid

2.23.2-43

libxc

4.1.0

libxp

1.0.2

libxsmm

1.9

libzip

0.10.1-8

liggghts

3.8.0

lighter

1.1.2

lkh

2.0.9

lmdb

latest

locarna

1.9.2.3

locuszoom

1.4(default), 1.4.fixed

lofreq

2.1.3.1

lsd

0.3beta

lumpy-sv

0.2.13

M

macs

3.0.0a5

macs2

2.1.1.20160309

mafft

7.310

mageck

0.5.9.4

magic-impute

1.5.5

magicblast

1.5.0

magma

1.6.1, 2.0.2

mainmast

1.0

make

4.3

maker

3.01.03

malpem

1.2(default)

mango

4.0.1

manta

1.5.0-gcc5

mantid

3.13.0, 3.8.0, 3.9.0

mapdamage

2.0.9(default), 2.0.9-u1

mash

2.1(default), 2.1.1, 2.2

materialsstudio

18.1.0

mathematica

12.1.1(default)

mathgl

1.11.2, 2.0.3(default), 2.3.3

matlab

r2012b, r2014a, r2014b, r2015b, r2016a, r2017a, r2017b, r2017b-caffe, r2018a, r2019a, r2019b(default), r2020a, r2020b, r2021a

mauve

20150213

maven

3.3.9

maxquant

1.6.5.0

mc

4.8.21

mcl

11-294

mcorr

b7481e1

mcr2010b

1.0

mcscanx

97e74f4

megahit

1.1.3, 1.2.4-beta, 1.2.9

meld

0.4.14

melt

2.2.2

meme

5.0.1

merantk

1.2.1

mercurial

4.7.1

mesa

13.0.5, 21.3.1, default

meshlab

2016.12-gcc5, 2019.03

meson

0.51.0, 0.59.2

metabat

2.15.5

metabolic

4.0

metacache

1.1.1

metal

2011

metaphlan

2.0, 3.0-sif(default)

metaplotr

2018_09

metawrap

1.1.3

metis

5.1.0

mevislab

2.8.1-gcc-64bit

miakat restricted

4.2.6

minc-lib

2.2-git-gcc4

minc-tools

2.2

miniasm

0.3

miniconda3

4.1.11-python3.5, 4.8.3-python3.8, 4.9.2-python3.9

minimap2

2.17-r954-dirty, 2.1.8

minipolish

0.1.3

minizinc

2, 2.3.1, 2.5.2

mir-prefer

0.24

mixcr

3.0.7

mkl

2018u3

mlst

2.15

mne

TF-201804

molden

5.7

mono

5.20.1.19

moose

1.0, 1.0-vtk

morphind

1.4

mosek

9.2.38

motif

2.3.4

motioncor2

20180924, 20181020, 20181020-cuda91, 2.1, 2.1.10-cuda8, 2.1.10-cuda9.1, 2.1.3.0-cuda101, 2.1.3.0-cuda80, 2.1.4.0-cuda101, 2.1.4.2-cuda101

motioncorr

2.1

motioncorr2

20160822

mpfr

3.1.5

mpifileutils

20170922, 20200701

mpip

3.4.1

mplus

8.6

mrbayes

3.2.6, 3.2.6-mpi

mrf restricted

0.2.2(default)

mriconvert

2.1.0

mricrogl

1.0.20170207, 20180623

mricron

06.2013, 30apr2016

mriqc

0.14.2, 0.15.2.rc1, 0.9.7

mrpeek

preview2

mrtrix

0.3.15-gcc4, 0.3.15-gcc5, 0.3.16, 20170712, 3.0.0, 3.0.1, 3.0.2, 3.0.3, 3.0_rc3, 3.0_rc3_latest

mrtrix3tissue

5.2.8, 5.2.8-ubuntu, 5.2.9

msm_hocr

3.0

multiwfn

3.8, 3.8_dev_20210627

mummer

3.23-gcc5, 4.0.0.beta2-gcc5

muscle

3.8.31

mustem

5.3

mxtools

0.1

mydata

0.9.2, 0.9.2-20201020(default)

mydata-python

20200603

mykrobe

0.8.1

mytardis

0.1(default)

mytardisclient

20200603

N

namd

2.12-ibverbs-smp-cuda, 2.12-multicore, 2.13-multicore, 2.13-multicore-CUDA, 2.14-multicore, 2.14-multicore-cuda

nanconvert

latest

nanofilt

201807

nanopolish

0.10.1, 0.11.1

nasm

2.15.03

nccl

2.10.3-cuda11.0, 2.4.7-cuda10.0, 2.4.7-cuda9.1, master, master-gcc4

netcdf

4.4.1.1(default), 4.4.1.1-openmpi-1.10.7-mlx, 4.7.0, 4.7.1-intel

netpbm

10.0

neuro-workshop

20191115

neuro_workflow

2017v2

new-fugue

2010-06-02

newick-utils

1.6

nextflow

21.04

nextgenmap

0.5.5

ngsadmix

32

ngsqctoolkit

2.3.3

ngstools

14b68ed

nibabel

2.3.3

niftilib

2.0.0

nighres

1.1.0b1

niistat

9.oct.2016

nilearn

0.6.2(default)

ninja

1.10.2, 1.9.0

nis-elements-viewer

4.20

nlopt

2.6.1, 2.6.1-gcc4, 2.6.1-gcc5

nn restricted

0.2.4(default)

novactf

03.2018

nsight

2019.5.0

nullarbor

2.0.20181010, 2.0.20191013

nvidia-sdk

21.9, 21.9-byo-compiler, 21.9-nompi

O

objexport restricted

0.0.4(default)

octave

4.2.2

octopus

8.4, 8.4-parallel

omero.insight

5.5.10

omsimulator

2.0.1

openbabel

2.4.1

openblas

0.2.20

openbugs

3.2.3

opencv

3.4.1, 3.4.10-gcc5, 3.4.11, 3.4.1-gcc4, 4.1.0, 4.4.0

openexr

2.5.5

openface

2.2.0

openfoam

4.1, 5-paraview54, 5.x, v1912

openjpeg

2.3.0, 2.3.1

openmm

7.4(default), 7.5

openmm-velocity-verlet

6cebae3, 7.4

openmodelica

1.14.2

openmpi

1.10.3-gcc4-mlx, 1.10.3-gcc4-mlx-cuda75, 1.10.3-gcc4-mlx-verbs, 1.10.3-gcc4-mlx-verbs-cuda75, 1.10.3-gcc5, 1.10.3-gcc5-mlx, 1.10.7-1.mlx, 1.10.7-intel, 1.10.7-mlx(default), 1.10.7-mlx-intel, 2.1.6-mlx-intel, 3.1.4-mlx, 3.1.6-ucx, 4.1.2-ucx

opennmt-py

0.7.0

openpose

1.6.0

openrefine

3.1

openslide

3.4.1

optitype

1.3.5

orange3

ansto

orca

4.0.1(default), 4.2.1, 4.2.1-216

orfm

v0.7.1

osg

3.6.5

otpo

1.0

P

packer

1.3.5

paleomix

1.2.13.4-python2

paml

4.9

panaroo

1.1.2, 1.2.4

pandoc

2.7.3

paraview

4.0.1, 5.6.0, ansto

parliament2

0.1.11

parsyncfp

1.67

partitionfinder2

2.1.1

pastml

1.0

pbh5tools

2018-12-13

pbzip2

1.1.13

pcangsd

1.03

peakseq

1.3.1

perl

5.24.0, 5.28.0(default), 5.30.1, 5.32.1

petsc

3.10.1-gcc5, 3.12.1, 3.13.2-gcc5

pgap

3958

pgi

2019, 2020

phate

0.4.4

phenix restricted

1.11.1, 1.15.1, 1.15.2, 1.18.2

phreeqc

3.5.0

phyloflash

3.4

phyml

3.1

picard

2.19.0(default), 2.25.6, 2.9.2

picrust2

2.1.4_b(default), 2.2.0_b

pigz

2.3.3, 2.3.4

pilon

1.22

pindel

0.6.3-gcc5

plasclass

b80a4f4(default)

plasmidfinder

2.1

plink

1.7, 1.9, 1.90b6.10, 2.0-alpha

plinkseq

0.10

plumed

2.5.0

pmix

3.1.2, v2.2

pointless

1.10.28

posgen restricted

0.0.1(default)

posminus restricted

0.2.3(default)

pplacer

v1.1.alpha19

prank

170427

prismatic

1.1

prismatic-cpu

1.1

prodigal

2.6.3

proj

4.9.3, 5.1.0, 6.2.1(default), 8.1.1

prokka

1.13.3(default), 1.14.5, 1.14.6

protobuf

master, master-gcc4

protomo

2.4.2

psi4

v1.1, v1.3.2

psortb

3.0

psortm

3.0

pulchra

3.06

purge_dups

1.2.5

purge_haplotigs

1.1.0

pv

1.6.6

py4dstem

0.11.5, 0.3

pybids

0.9.1

pycharm

2018.3.3

pydeface

1.1.0

pydicom

1.4.2(default)

pyem

v0.1, v0.1-201806, v0.3, v0.5

pymol

1.8.2.1, 1.8.6, 2.4.0

pyprismatic

1.1.16, 1.2.1

pypy

7.0.0-3.6

pysam

0.15.2-python2

pyscenic

0.10.0(default), 0.9.18

python

2.7.11-gcc, 2.7.12-gcc4(default), 2.7.12-gcc5, 2.7.15-gcc5, 2.7.17-gcc8, 2.7.18-gcc5, 2.7.18-ucs4-gcc5, 3.5.2-gcc, 3.5.2-gcc4, 3.5.2-gcc5, 3.6.2, 3.6.2-static, 3.6.6-gcc5, 3.7.2-gcc6, 3.7.3-system, 3.8.5, 3.8.5-gcc8, 3.8.5-gcc8-static

pytom

0.971

pytorch

1.0-cuda10, 1.1-cuda10(default), 1.3-cuda10, 1.5-cuda10, 1.6-cuda10

pyxnat

1.1.0.2, 20170308

Q

qatools

1.2

qctools

v2.0-beta

qgis

3.9.0

qhull

2003.1, 2015.2

qiaseq-dna

1.0(default), 14.1

qiime1

1.9.1

qiime2

2017.9, 2018.11, 2018.2, 2018.4, 2019.1, 2019.4, 2019.7-q2_scnic, 2019.7-q2_scnic_2, 2020.8

qit

2148

qt

5.7.1-gcc5

qt5-qtwebkit

5.9.1

quantumespresso

6.8, 6.8-gpu

quicktree

2.0, 2.5

quit

1.1, 2.0.2

qupath

0.2.0-m4

R

3.3.1, 3.4.3, 3.5.0, 3.5.1, 3.5.2-openblas, 3.5.3-mkl, 3.6.0-mkl(default), 3.6.2-mkl, 4.0.0-openblas, 4.0.5, 4.1.0-mkl

R

r-launcher

0.0.1(default)

racon

1.3.1, 1.4.3

raremetal

4.15.1

raven

1.1.10

raxml

8.2.12, 8.2.9

raxml-ng

1.0.0

razers3

3.5.8

rclone

1.49.3, 1.55.1

rdf-kd restricted

0.0.1(default)

rdkit

2019.03.3.0

readline

7.0

relion

1.4, 2.02, 2.0.6, 2.0beta, 2.1(default), 2.1.b1, 2.1.b2, 2.1-openmpi-1.10.7-mlx, 3.0-20181109-cuda80, 3.0-20181109-cuda91, 3.0-20190115, 3.0.5, 3.0.5-uow, 3.0.6, 3.0.6-uow, 3.0.7, 3.0.7-uow, 3.0.7-uow-cuda10.1, 3.0.7-uow-mc2.1.3.0, 3.0-beta, 3.0-stable, 3.0-stable-cuda91, 3.0-stable-uow, 3.0-uow-20180904, 3.0-uow-20180917, 3.0-uow-20181109-cuda80, 3.0-uow-20181109-cuda91, 3.0-uow-20190115, 3.1.0, 3.1.0-uow, 3.1.0-uow-v2, 3.1.2, 3.1_beta, 3.1_beta-20191105, 3.1_beta-20191113, 3.1_beta-20200109, 3.1_beta-latest, ver3.1_20200904, ver3.1_20200925, ver3.1_20201028, ver3.1_20201102

repeatmasker

4.1.1

resmap

1.1.4, 1.1.5, 1.9.5

rest

1.8, 1.8-matlab2017a.r6685

retools

1.3

rgi

5.1.0

rings

1.3.3

rmblast

2.10.0

rnammer

1.2

roary

3.11.2(default), 3.12.0

robex

1.2

root

5.34.32, 6.22.02

rosetta restricted

2018.09, 2020.08, 2020.37-mpi

rpm2cpio

4.16.1-fedora

rsem

1.3.0

rseqc

3.0.0

rstudio

1.0.143, 1.0.44, 1.1.414, 1.1.463, 1.1.463-r3.5.3-mkl, 1.1.463-r3.6.0-mkl, 1.4.1717

rstudioserver_epigenetics

1.0, 1.0-20171101

rsync

3.1.3

rtk

ansto

ruby

3.0.1

S

saintexpress

3.6.3

salmon

0.14.1(default), 1.5.2

salome

9.2.0

sambamba

0.8.0

samblaster

0.1.26

samclip

0.2

samtools

0.1.18, 1.10, 1.3.1, 1.6, 1.7, 1.7-gcc5, 1.9, 1.9-gcc5

sas

9.4

sbt

0.13.15, 1.2.1

scalapack

2.0.2

scipion

2.0, devel, devel-20170327, v1.0.1_2016-06-30, v1.1, v1.1.1, v1.2, v1.2.1, v1.2.1_2018-10-01

scrappie

1.4.1

sdm_1d_calculate restricted

2.0.2(default)

sdm_1d_plot restricted

0.0.4(default)

sdm_2d_calculate restricted

2.0.2(default)

sdm_2d_plot restricted

0.0.4(default)

seacr

1.3

segadapter

1.9

seqgen

1.3.4

seqtk

1.3

shapeit

v2_r837, v2_r904

shovill

1.0.4

shrimp2

2.2.3

sidesplitter

120220, 20201028

silo

4.10.2

simnibs

2.0.1g, 3.1.2

simple

2.1, 2.5

simul-atrophy

12-09-2017, rjbcompilepetscmaster-04032020, RJBCompilePetscMaster-190220

singlem

0.12.1

singularity

2.3.1, 2.4.2, 2.4.5, 2.5.2, 3.0, 3.0.1, 3.0.2, 3.1.0, 3.2.0, 3.2.1(default), 3.4.0, 3.5.2, 3.5.3, 3.7.1, d3d0f3fdc4390c7e14a6065543fc85dd69ba42b7

situs

3.1

ska

1.0-e1968f0

skesa

2.2.1, 2.3(default)

skewer

20170212

slamdunk

latest

slim

3.2, 3.3.1

slurm

17.11.4

smafa

0.5.0

smcounter

10apr2017

smux

0.0.1

snap

2013-11-29

snappy

master, master-gcc4

snippy

4.3.8, 4.4.5

snoscan

1.0

snp-dists

0.6.3

snp-sites

2.5.1

snpeff

4.3t

snpm

13

soapdenovo2

2.04-r241

sortmerna

2.1b

sourcetracker

2.0.1

spaceranger

1.3.0

spades

3.12.0, 3.13.1, 3.15.3

sparseassembler

1.0

sparsehash

2.0.3

spectra

0.8.1

speedseq

0.1.2

spider

21.11

spm12

matlab2015b.r6685, matlab2018a.r6685, matlab2018a.r7487, matlab2021a.r7771

spm8

matlab2015b.r6685, matlab2017a.r6685

spring

0.86.1661, 0.87.1723

spss

26

sqlite3

3.30.1

squashfs-tools

4.3-0.21

squashfuse

0.1.103

sra-tools

2.7.0, 2.9.2, 2.9.4, 2.9.6

srst2

0.2.0, 0.2.0-2019

stacks

2.4

star

2.5.2b, 2.7.9a

star-fusion

1.9.1

stata restricted

14(default), 14.2, 16, 16u2021

stisuite

3.0

strelka

2.8.4

stringtie

1.3.5, 1.3.6, 2.1.5

structure

2.3.4

subread

1.5.1, 2.0.1

subversion

1.9.5

suitesparse

5.4.0

sumo

1.5.0

superlu

3.1

surfice

7_feb_2017

svd

1.4

svim

1.4.0

svs

8.8.3

swig

3.0.12, 4.0.1

synb0

v1.1(default)

synopsys

3.1(default)

synthseg

1c9995e

T

tannertools

2016.1, 2016.2

tapsim

v1.0b_r766

tbb

20180312oss

tempest

1.5

tensorflow

1.0.0-python2.7.12-gcc5, 1.10.0-pytorch, 1.10.0-pytorch-all, 1.10.0-pytorch-keras, 1.12.0-python2.7.12-gcc5, 1.12.0-python3.6-gcc5, 1.13.1-gdal, 1.14.0-keras, 1.14.0-keras-pydicom, 1.15.2-gpu, 1.15.2-python3.7.3-gcc8, 1.3.0-python2.7.12-gcc5, 1.4.0-python2.7.12-gcc5, 1.4.0-python3.6-gcc5, 2.0.0-beta1, 2.0.0-gpu(default), 2.2.0, 2.3.0, 2.4.1

tensorrt

6.0.1.5-cuda10, 7.0.0.11-cuda10, 7.2.1

terastitcher

20171106

texlive

2017

tiff

4.0.8

tigervnc

1.8.0

tmap

3.0.1

tomowarp2

03f3ee8

toothmaker

0.64

topaz

1.0, latest, latest-uow

tophat

2.1.1

tracer

1.6

trackvis

0.6.1

tractseg

2.0(default), 2.3

transdecoder

5.5.0

trf

4.09.1

trim_galore

0.4.5, 0.5.0

trimmomatic

0.38

trinity

2.8.5(default), 2.8.5-gcc5

turbovnc

2.0.2(default), 2.1.0

tvips-tools

0.0.3

U

ucsc-genome-tools

201806

ucx

1.6.1

udunits2

2.2.20-2

ufo-kit

ansto

umap

0.3.8

umi-tools

0.5.5-python2, 0.5.5-python3

unblur

1.0.2

underworld

2.3.0, 2.8.0b, 2.9.1b, 2.9.4b

unicycler

0.4.7

unimelb-mf-clients

0.2.7, 0.3.2

unrar

5.0

V

v8

3.14.5.10-25

vaa3d

3.601

valgrind

3.13

vamb

3.0.2

varscan

2.3.9

vasp restricted

5.4.4(default), 5.4.4.eyk, 5.4.4-ucx

vcftools

0.1.15

vdjtools

1.2.1

vegas2

v02

velvet

1.2.10, 1.2.10-modified

vep

90(default), 94

viennarna

2.4.15, 2.4.17

vigra

1.9.0

vim

8.0.0596, 8.2, 8.2-container

viptreegen

1.1.2

virsorter

1.0.6

virtualgl

2.5.0(default), 2.5.2, 2.6.2

visit

2.12.3

visualqc

0.5

vmd

1.9.3, 1.9.4

volview

3.4

voro++

0.4.6

vscode

1.39.2(default), 1.53.2

vsearch

2.13.6

vt

0.57

vtk

5.10.1, 5.10.1-gcc4, 7.0.0, 7.0.0-gcc5, 9.0.1

W

wasp

0.3.0

weblogo

3.7

wfu_pickatlas

3.0.5b

wgsim

0.3.1-r13

workspace

4.0.2

wtdbg2

2.5

wxgtk

3.0.2

wxwidgets

3.0.3

X

x2goclient

4.1.2.1, 4.1.2.2

xcpengine

1.2.3

xds

20170302, 2020210205, monash(default), mxbeamteam

xjview

9.0, 9.6, 9.7

xnat-desktop

0.96, 1.0.40

xnat-upload-assistant

1.1.3

xnat-utils

0.2.1, 0.2.5, 0.2.6, 0.4.5, 0.4.6, 0.4.9, 0.5.3, 0.5.5, 0.7.3

xnatpy

0.3.18, 0.3.26

xvfb

1.19.3

Y

yade

1.20.0-cpu, 1.20.0-gpu, 2019-06-20, 2019-06-20-cpu, yade-daily-may-2019

yasm

1.2.0-4, 1.3.0

Z

zetastitcher

0.3.3

zlib

1.2.11

zoem

11-166

zoltan

3.83

zonation

4.0.0

zopfli

1.0.3

zstd

1.4.0